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Download scientific diagram | 10 important CpG sites out of 2000 from publication: An Efficient Approach to Screening Epigenome-Wide Data | Screening cytosine-phosphate-guanine dinucleotide (CpG ...

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Therefore, in this thesis, we compared the performance of ttScreening and RRF with simulation studies and applied to a real data example in identifying potential CpG sites at birth of the …

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ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples - Packages · cran/ttScreening:exclamation: This is a read-only mirror of the CRAN R package repository. ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples - Packages · cran/ttSc...

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Description A screening process utilizing training and testing samples to filter out uninforma-tive DNA methylation sites. Surrogate variables (SVs) of DNA methylation are in-cluded in the …

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Package 'ttScreening' October 14, 2022 Type Package Title Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples Version 1.6 Date Author Meredith Ray, Xin Tong, Hongmei Zhang Maintainer Meredith Ray Description A screening process utilizing training and testing samples to filter ...

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Many epigenetic studies used either the Training-Testing Screening (ttScreening) or the Recursive Random Forest (RRF), however, the comparison of those two methods has not been discussed. Therefore, in this thesis, we compared the performance of ttScreening and RRF with simulation studies and applied to a real data example in identifying ...

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ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

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ttScreening-package {ttScreening} R Documentation: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples Description. A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing ...

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Discover Epidemiology Abbreviations: Dive deeper into a comprehensive list of top-voted Epidemiology Acronyms and Abbreviations. Explore ttScreening Definitions: Discover the complete range of meanings for ttScreening, beyond just its connections to Epidemiology. Contribute an Abbreviation: Have an abbreviation we haven't listed?Add your knowledge to …

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A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering …

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What does TTSCREENING abbreviation stand for? List of 1 best TTSCREENING meaning form based on popularity. Most common TTSCREENING abbreviation full form updated in December 2022

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In ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Description Usage Arguments Details Value Note Author(s) References. Description. This function is directly modified from the orginal num.sv() in the sva package. This function has the tolerance level in the fast.svd() function set back to its orginal default instead …

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A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples. Surrogate variables are included to account for unknown factors.

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2 ttScreening-package ttScreening-package Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples Description A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples.

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The ttScreening method selected 9 CpG sites and the other two methods selected 0 CpG sites. Conclusions. Our simulation results indicate that ttScreening performs better than FDR-based screening and that it is at least as good as Bonferroni in terms of correctly identifying CpG sites that are associated with other variables. The package is ...

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Screening cytosine-phosphate-guanine dinucleotide (CpG) DNA methylation sites in association with some covariate (s) is desired due to high dimensionality. We incorporate surrogate …

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ttScreening-package: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples: irwsva.build2: Adjusted irwsva.build which builds surrogate variables from …

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Discover Medical Abbreviations: Dive deeper into a comprehensive list of top-voted Medical Acronyms and Abbreviations. Explore ttScreening Definitions: Discover the complete range of meanings for ttScreening, beyond just its connections to Medical. Contribute an Abbreviation: Have an abbreviation we haven't listed?Add your knowledge to our database and help expand …

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A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined …

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This is a read-only mirror of the CRAN R package repository. ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

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The ttScreening package contains the following man pages: irwsva.build2 num.sv2 sva2 ttScreening ttScreening-package. rdrr.io Find an R package R language docs Run R in your browser. ttScreening Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Package index. Search the ttScreening package ...

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Contribute to lxie3/ttScreening_repeated development by creating an account on GitHub.

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To make it easier to users, this screening method is built into a user-friendly R package, ttScreening, with efficient algorithms implemented. Various simulations were implemented to examine the robustness and sensitivity of the method compared to the classical approaches controlling for multiple testing: the false discovery rates-based (FDR ...

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In ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples. Description Details Author(s) References See Also. Description. A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing …

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Download scientific diagram | A conceptual representation of the training and testing algorithm. from publication: An Efficient Approach to Screening Epigenome-Wide Data | Screening cytosine ...

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A screening process built upon training and testing samples Description. A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing samples.

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A screening process to filter out non-informative DNA methylation sites by applying (ordinary or robust) linear regressions to training data, and the results are further examined using testing …

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ttScreening-package: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples: irwsva.build2: Adjusted irwsva.build which builds surrogate variables from gene expression data: num.sv2: Adjusted num.sv which estimates the number of important surrogate variables from a gene expression data set. sva2

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:exclamation: This is a read-only mirror of the CRAN R package repository. ttScreening — Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples - ttScreening/MD5 at m...

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Contribute to lxie3/ttScreening_repeated development by creating an account on GitHub. Skip to content Toggle navigation. Sign up Product Actions. Automate any workflow Packages. Host and manage packages Security. Find and fix vulnerabilities Codespaces. Instant dev environments ...

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Check Details. Version: 1.6 Check: Rd cross-references Result: NOTE Found the following Rd file(s) with Rd link{} targets missing package anchors: ttScreening-package.Rd: sva Please provide package anchors for all Rd link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows …

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